CELLULAR MEDICINE RESEARCH DIVISION

Research at the University of St Andrews School of Medicine

Our strategy

The division of cellular medicine (CMED) combines basic and clinical research with the goal of understanding the cellular and molecular basis of disease. Our interdisciplinary research uses cutting edge technology to address fundamental biomedical processes involved in health and disease.

Research advances

£15M new Artificial Intelligence centre for Scotland to innovate and transform healthcare

Scotland is to have its own £15.8m artificial intelligence health research centre, which promises to enable better patient diagnosis, treatment and outcomes.

The Industrial Centre for Artificial Intelligence Research in Digital Diagnostics, to be known as iCAIRD, brings together a pan-Scotland collaboration of 15 partners from across academia, the NHS and industry.

Professor David Harrison, Principal Investigator for the project, based in St Andrews but with visiting professorships in both Glasgow and Edinburgh, said: “I am delighted that iCAIRD has been awarded £10m from Innovate UK. With our pan-Scotland approach, we will build on existing strengths and deploy AI within NHS Scotland to transform diagnostics and healthcare in Scotland to improve outcomes for patients. Further details.

ERISM

F-actin and nuclei expression (left) and ERISM displacement map (right) at 12-day differentiation of podocytes that are in contact with each other.

N2 domain

X-ray crystal structure of the N2 domain of HRG. PDB: 4CCV

Arrested endosomal maturation in bacterial infection

Kiss1-expressing pyramidal neurons (green) and c-Fos (red) in a hippocampal section of a Kiss1-Cre mouse brain

Calcium flux in a living mouse brain section expressing a genetically encoded calcium indicator. Stimulation was performed using a pulse of hyperkalemic solution. Experiment performed by Dr Tello.

Recent publications

20 (of 177 /dk/atira/pure/researchoutput/status/published available) for Cellular Medicine Division (source: University of St Andrews PURE)
Please click title of any item for full details

Abstract 1576: Molecular profiling of the desmoplastic reaction within the colorectal tumor microenvironment using the nCounter® platform Ines Nearchou, Tadakazu Ao, Satsuki Mochizuki, Sarah Warren, Hirofumi Harashima, Peter David Caie, Hideki Ueno
2020
Abstract LB-368: Applications of automated image analysis, machine learning and spatial statistics for the improvement of stage II colorectal cancer prognosis Ines Nearchou, Daniel A. Soutar, Kate Lillard, Hideki Ueno, Oggie Arandelovic, David James Harrison, Peter David Caie
2020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, Andre Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin Raphael, Mark A Rubin, Chris Sander, Lincoln Stein, Joshua M. Stuart, David A. Wheeler, Rory Johnson, Tatsuhiko Tsunoda, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Joachim Weischenfeldt, Rameen Berouckhim, Iñigo Martincorena, Jakob Skou Pedersen, Gad Getz, Andy Lynch
Nature 2020 vol. 578 pp. 102-111
Atherosclerosis linked to aberrant amino acid metabolism and immunosuppressive amino acid catabolizing enzymes Bozidarka L. Zaric, Jelena N. Radovanovic, Zoran Gluvic, Alan J. Stewart, Magbubah Essak, Olaa Motwalli, Takashi Gojobori, Esma R. Isenovic
Frontiers in Immunology 2020 vol. 11
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing Isidro Cortés-Ciriano, Jake June Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L. Jung, Lixing Yang, Dmitry Gordenin, Leszek J. Klimczak, Cheng Zhong Zhang, David S. Pellman, Peter J. Park, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Rameen Beroukhim, Paul C. Boutros, David Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Lars Feuerbach, J. Lynn Fink, Milana Frenkel-Morgenstern, Dale W. Garsed, Mark Gerstein, Dmitry A. Gordenin, David Haan, James E. Haber, Julian M. Hess, Barbara Hutter, Marcin Imielinski, David T.W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Jan O. Korbel, Kiran Kumar, Eunjung Alice Lee, Jake June Koo Lee, Yilong Li, Geoff Macintyre, Andy Lynch
Nature Genetics 2020 vol. 52 pp. 331-341
Deep learning enabled laser speckle wavemeter with a high dynamic range Roopam Gupta, Graham David Bruce, Simon John Powis, Kishan Dholakia
Laser & Photonics Reviews 2020 vol. 14
Developing electron microscopy tools for profiling plasma lipoproteins using methyl cellulose embedment, machine learning and immunodetection of apolipoprotein B and apolipoprotein(a) Yvonne Giesecke, Samuel Soete, Katarzyna MacKinnon, Thanasis Tsiaras, Madeline Ward, Tamas Suveges, James E. Lucocq, Stephen J. McKenna, John Milton Lucocq
International Journal of Molecular Sciences 2020 vol. 21
Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer Kadir C. Akdemir, Victoria T. Le, Sahaana Chandran, Yilong Li, Roel G. Verhaak, Rameen Beroukhim, Peter J. Campbell, Lynda Chin, Jesse R. Dixon, Andrew Futreal, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Rameen Beroukhim, Paul C. Boutros, David Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A.W. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Lars Feuerbach, J. Lynn Fink, Milana Frenkel-Morgenstern, Dale W. Garsed, Mark Gerstein, Dmitry A. Gordenin, David Haan, James E. Haber, Julian M. Hess, Barbara Hutter, Marcin Imielinski, David T.W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Jan O. Korbel, Kiran Kumar, Eunjung Alice Lee, Jake June Koo Lee, Yilong Li, Geoff Macintyre, Andy Lynch
Nature Genetics 2020 vol. 52 pp. 294-305
Four meta-analyses across 164 studies on atypical footedness prevalence and its relation to handedness Julian Packheiser, Judith Schmitz, Gessa Berretz, David P. Carey, Silvia Paracchini, Marietta Papadatou-Pastou, Sebastian Ocklenburg
Scientific Reports 2020 vol. 10
Genome Wide Association Study reveals new insights into the heritability and genetic correlates of developmental dyslexia Alessandro Gialluisi, Till F M Andlauer, Nazanin Mirza-Schreiber, Kristina Moll, Jessica Becker, Per Hoffman, Krestin U Ludwig, Darina Czamara, Beate St Pourcain, Ferenc Honbolygó, Dénes Tóth, Valéria Csépe, Guillaume Huguet, Yves Chaix, Stephanie Iannuzzi, Jean-Francois Demonet, Andrew P Morris, Jacqueline Hulslander, Erik G Willcutt, John C DeFries, Richard K Olson, Shelley D Smith, Bruce F Pennington, Anniek Vaessen, Urs Maurer, Heikki Lyytinen, Myriam Peyrard-Janvid, Paavo H T Leppänen, Daniel Brandeis, Milene Bonte, John F Stein, Joel B Talcott, Fabien Fauchereau, Arndt Wilcke, Holger Kirsten, Bent Müller, Clyde Francks, Thomas Bourgeron, Anthony P Monaco, Franck Ramus, Karin Landerl, Juha Kere, Thomas S Scerri, Silvia Paracchini, Simon E Fisher, Johannes Schumacher, Markus M Nöthen, Bertram Müller-Myhsok, Gerd Schulte-Körne
Molecular Psychiatry 2020
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations Yiqun Zhang, Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Chad J. Creighton, Alvis Brazma, Samirkumar B. Amin, Philip Awadalla, Peter J. Bailey, Alvis Brazma, Angela N. Brooks, Claudia Calabrese, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, David Craft, Natalie R. Davidson, Deniz Demircioğlu, Serap Erkek, Nuno A. Fonseca, Milana Frenkel-Morgenstern, Mary J. Goldman, Liliana Greger, Jonathan Göke, Yao He, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Andre Kahles, Ekta Khurana, Helena Kilpinen, Jan O. Korbel, Fabien C. Lamaze, Kjong Van Lehmann, Chang Li, Siliang Li, Xiaobo Li, Xinyue Li, Dongbing Liu, Fenglin Liu, Xingmin Liu, Maximillian G. Marin, Julia Markowski, Matthew Meyerson, Tannistha Nandi, Morten Muhlig Nielsen, Andy Lynch
Nature Communications 2020 vol. 11
Human handedness: a meta-analysis Marietta Papadatou-Pastou, Eleni Ntolka, Judith Schmitz, Maryanne Martin, Marcus R. Munafò, Sebastian Ocklenburg, Silvia Paracchini
Psychological Bulletin 2020 vol. 146 pp. 481–524
Monitoring contractility in cardiac tissue with cellular resolution using biointegrated microlasers Marcel Schubert, Lewis Woolfson, Amy Dorward, Becky Casement , Andrew Morton, Paul L. Appleton, Gareth Brian Miles, Carl S Tucker, Samantha J. Pitt, Malte Christian Gather
Nature Photonics 2020 vol. 14 pp. 452–458
Ovarian hormones induce de novo DNA methyltransferase expression in the Siberian hamster suprachiasmatic nucleus Chris S. Coyle, Federico Caso, Elisabetta Tolla, Perry Barrett, Kenneth G. Onishi, Javier Ananda Tello, Tyler John Stevenson
Journal of Neuroendocrinology 2020 vol. 32
Pan-cancer analysis of whole genomes Peter J. Campbell, Gad Getz, Jan O. Korbel, Joshua M. Stuart, Jennifer L. Jennings, Lincoln D. Stein, Marc D. Perry, Hardeep K. Nahal-Bose, B. F.Francis Ouellette, Constance H. Li, Esther Rheinbay, G. Petur Nielsen, Dennis C. Sgroi, Chin Lee Wu, William C. Faquin, Vikram Deshpande, Paul C. Boutros, Alexander J. Lazar, Katherine A. Hoadley, David N. Louis, L. Jonathan Dursi, Christina K. Yung, Matthew H. Bailey, Gordon Saksena, Keiran M. Raine, Ivo Buchhalter, Kortine Kleinheinz, Matthias Schlesner, Junjun Zhang, Wenyi Wang, David A. Wheeler, Li Ding, Jared T. Simpson, Brian D. O’Connor, Sergei Yakneen, Kyle Ellrott, Naoki Miyoshi, Adam P. Butler, Romina Royo, Solomon I. Shorser, Miguel Vazquez, Tobias Rausch, Grace Tiao, Sebastian M. Waszak, Bernardo Rodriguez-Martin, Suyash Shringarpure, Dai Ying Wu, German M. Demidov, Olivier Delaneau, Andy Lynch
Nature 2020 vol. 578 pp. 82-93
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition Bernardo Rodriguez-Martin, Eva G. Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia-Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L. Bruzos, Stefan C. Dentro, Miguel G. Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D. Roberts, Sonia Zumalave, Paul A.W. Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A. Wala, Keiran Raine, Adam Butler, Sebastian M. Waszak, Fabio C.P. Navarro, Steven E. Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J. Park, David C. Wedge, Rameen Beroukhim, David Torrents, Jan O. Korbel, Inigo Martincorena, Rebecca C. Fitzgerald, Peter Van Loo, Haig H. Kazazian, Kathleen H. Burns, Peter J. Campbell, Jose M.C. Tubio, Andy Lynch
Nature Genetics 2020 vol. 52 pp. 306-319
Patterns of somatic structural variation in human cancer genomes Yilong Li, Nicola D. Roberts, Jeremiah A. Wala, Ofer Shapira, Steven E. Schumacher, Kiran Kumar, Ekta Khurana, Sebastian M. Waszak, Jan O. Korbel, James E. Haber, Marcin Imielinski, Joachim Weischenfeldt, Rameen Beroukhim, Peter J. Campbell, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Ken Chen, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Lars Feuerbach, J. Lynn Fink, Milana Frenkel-Morgenstern, Dale W. Garsed, Mark Gerstein, Dmitry A. Gordenin, David Haan, James E. Haber, Julian M. Hess, Barbara Hutter, Marcin Imielinski, David T.W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Jan O. Korbel, Kiran Kumar, Eunjung Alice Lee, Jake June Koo Lee, Yilong Li, Andy Lynch
Nature 2020 vol. 578 pp. 112-121

Athena Swan

Our division is committed to creating an inspiring and inclusive research environment in which all scientists can flourish.